I’ve been studyblr-ing for a few months now and finally decided to post a formal introduction. This blog was initially just a place for me to organize all of the studyblr/bujo posts I was saving, but since experiencing so much encouragement and love from the studyblr community, I’ve decided to become a more active part!
Some facts about me:
I’m 23 years old and am currently in a gap year between undergrad and graduate studies
I received my B.S. In Biology with a minor in Neuroscience and a focus in Pre-Med curriculum in May of 2016
I was accepted to a graduate program at my dream school, Duke University School of Medicine, but had to defer for a year when I was diagnosed with Stage 3 Hodgkin’s Lymphoma this last summer 😢 buuuut I went through six months of chemotherapy and, thankfully, am currently in remission!
I’m currently studying for the MCAT, which I’ll be taking in May! I’m also hoping to let lots of shadowing hours in once my immune system is fully recovered
I’ll begin the Master’s of Biomedical Sciences program at Duke in July and could not be more excited 💙
My long-term goal is to become an emergency physician, and eventually enter medical academia or healthcare advocacy and policy.
I live in the PNW and love being outdoors– hiking, biking, fishing, kayaking, backpacking, skiing, I love all of it! I also love cooking, consignment stores, doggos of all shapes and sizes, photo editing, creating my bullet journal, getting lost in Spotify, The Office, Harry Potter, most Netflix original series, and learning to watercolor.
A few of my favorite studyblr’s are: (shout out, you guys are great and have already saved my butt on multiple occasions)
I tag my original posts with #mine so I take credit for none of these posts unless you see that tag! I’m looking forward to connecting with all of you lovely study bloggers and definitely follow back! ☺️
Brain Regions of PTSD Patients Show Differences During Fear Responses
Regions of the brain function differently among people with post-traumatic stress disorder,
causing them to generalize non-threatening events as if they were the
original trauma, according to new research from Duke Medicine and the
Durham VA Medical Center.
Using functional MRI, the researchers detected unusual activity in
several regions of the brain when people with PTSD were shown images
that were only vaguely similar to the trauma underlying the disorder.
The findings, reported in the Dec. 15, 2015, issue of the journal
Translational Psychiatry, suggest that exposure-based PTSD treatment
strategies might be improved by focusing on tangential triggers to the
“We know that PTSD patients tend to generalize their fear in response
to cues that merely resemble the feared object but are still distinct
from it,” said Rajendra A. Morey, M.D., an associate professor in the Department of Psychiatry and Behavioral Sciences
at Duke and director of the Neuroimaging Lab at the Durham VA Medical
Center. “This generalization process leads to a proliferation of
symptoms over time as patients generalize to a variety of new triggers.
Our research maps this in the brain, identifying the regions of the
brain involved with these behavioral changes.”
Morey and colleagues enrolled 67 military veterans who had been
deployed to conflict zones in Iraq or Afghanistan after Sept. 11, 2001,
and who had been involved in traumatic events. Thirty-two were diagnosed
with PTSD and 35 did not have the disorder.
All patients were showed a series of five facial images, depicting a
range of emotions from neutral to frightened, while undergoing a
functional MRI. The scans showed no dissimilarities between those with
PTSD and those unaffected.
Outside the MRI, the participants were shown the images again and
given a mild electrical shock when viewing the middle image – the face
showing moderate fear.
The patients then underwent another MRI scan as they viewed all five
faces. People with PTSD showed heightened brain activity when they saw
the most fearful face and associated it with the electric shock, even
though they had actually experienced shocks when the middle, less
fearful face appeared. Brain activity was heightened for the non-PTSD
group when participants saw the correctly associated middle face.
“The PTSD patients remembered incorrectly and generalized their
anxiety to the image showing the most fearful expression,” Morey said.
“This phenomenon was captured in MRI scans, showing where the PTSD group
had heightened activity.
“The amygdala, which is an important region in responding to threat,
did not show a bias in activation to any particular face,” Morey said.
“But there was a definite bias of heightened activity in response to the
most frightened expression in brain regions such as the fusiform gyrus,
insula, primary visual cortex, locus coeruleus and thalamus.”
Morey said the visual cortex was significant because it is not only
doing visual processing, but also assessing threats. He said the locus
coeruleus is responsible for triggering the release of adrenaline during
stress or serious threat.
These functional brain differences provide a neurobiological model
for fear generalization in which PTSD symptoms are triggered by things
that merely resemble the source of original trauma.
“People with posttraumatic stress disorder grow anxious based on
reminders of past trauma, and generalize that fear to a variety of
triggers that resemble the initial trauma,” Morey said. “Current fear
conditioning therapies are limited by repeated use of the same cue to
trigger the initial trauma, but they might be enhanced by including cues
that resemble, but are not identical to, cues in the original trauma.”
That beautiful thing that you see up there is a picture (SEM) of a Kidney Stone provided by Kevin Mackenzie from the University of Aberdeen.
We all heard about the pains that kidney stones can cause. The build up of salts and minerals can mean hours or days of pushing these suckers out. The pains that are associated with it for men are often compared to women giving birth, and there have been pretty standard methods of treatment.
1. Breaking them down through shock wave lithotripsy, a noninvasive technique in which high-frequency shock waves break the stones into smaller residues
2. If that doesn’t work, using surgical methods to remove it physically.
Researchers at Duke found a way to minimize damage and increase the waves’ accuracy and efficiency by changing the shape of the lens that focuses the shockwaves. Who said Physics wasn’t useful?!?
The sources include their recent publication. And the photo above depicts a 2mm stone, and is indeed false-colored just in case anyone was interested.
Most schools across the United States provide simple vision tests to their students—not to prescribe glasses, but to identify potential problems and recommend a trip to the optometrist. Researchers are now on the cusp of providing the same kind of service for autism.
Researchers at Duke University have developed software that tracks and records infants’ activity during videotaped autism screening tests. Their results show that the program is as good at spotting behavioral markers of autism as experts giving the test themselves, and better than non-expert medical clinicians and students in training.
The results appear online in the journal Autism Research and Treatment.
“We’re not trying to replace the experts,” said Jordan Hashemi, a graduate student in computer and electrical engineering at Duke. “We’re trying to transfer the knowledge of the relatively few autism experts available into classrooms and homes across the country. We want to give people tools they don’t currently have, because research has shown that early intervention can greatly impact the severity of the symptoms common in autism spectrum disorders.”
The study focused on three behavioral tests that can help identify autism in very young children.
In one test, an infant’s attention is drawn to a toy being shaken on the left side and then redirected to a toy being shaken on the right side. Clinicians count how long it takes for the child’s attention to shift in response to the changing stimulus. The second test passes a toy across the infant’s field of view and looks for any delay in the child tracking its motion. In the last test, a clinician rolls a ball to a child and looks for eye contact afterward—a sign of the child’s engagement with their play partner.
In all of the tests, the person administering them isn’t just controlling the stimulus, he or she is also counting how long it takes for the child to react—an imprecise science at best. The new program allows testers to forget about taking measurements while also providing more accuracy, recording reaction times down to tenths of a second.
“The great benefit of the video and software is for general practitioners who do not have the trained eye to look for subtle early warning signs of autism,” said Amy Esler, an assistant professor of pediatrics and autism researcher at the University of Minnesota, who participated in some of the trials highlighted in the paper.
“The software has the potential to automatically analyze a child’s eye gaze, walking patterns or motor behaviors for signs that are distinct from typical development,“ Esler said. "These signs would signal to doctors that they need to refer a family to a specialist for a more detailed evaluation.”
According to Hashemi and his adviser, Guillermo Sapiro, professor of electrical and computer engineering and biomedical engineering at Duke, because the program is non-invasive, it could be useful immediately in homes and clinics. Neither, however, expects it to become widely used—not because clinicians, teachers and parents aren’t willing, but because the researchers are working on an even more practical solution.
Later this year, the Duke team (which includes students and faculty from engineering and psychiatry) plans to test a new tablet application that could do away with the need for a person to administer any tests at all. The program would watch for physical and facial responses to visual cues played on the screen, analyze the data and automatically report any potential red flags. Any parent, teacher or clinician would simply need to download the app and sit their child down in front of it for a few minutes.
The efforts are part of the Information Initiative at Duke, which connects researchers from disparate fields to experts in computer programming to help analyze large data sets.
“We’re currently working with autism experts at Duke Medicine to determine what sorts of easy tests could be used on just a computer or tablet screen to spot any potential concerns,” said Sapiro. “The goal is to mimic the same sorts of social interactions that the tests with the toys and balls measure, but without the toys and balls. The research has shown that the earlier autism can be spotted, the more beneficial intervention can be. And we want to provide everyone in the world with the ability to spot those signs as early as possible.”
New role for immature brain neurons in the dentate gyrus identified
University of Alabama at Birmingham researchers have proposed a model that resolves a seeming paradox in
one of the most intriguing areas of the brain — the dentate gyrus.
This region helps form memories such as where you parked your car,
and it also is one of only two areas of the brain that continuously
produces new nerve cells throughout life.
“So the big question,” said Linda Overstreet-Wadiche, Ph.D., associate professor in the UAB Department of Neurobiology, “is why does this happen in this brain region? Entirely new neurons are being made. What is their role?”
In a paper published in Nature Communications
on April 20, Overstreet-Wadiche and colleagues at UAB; the University
of Perugia, Italy; Sandia National Laboratories, Albuquerque, New
Mexico; and Duke University School of Medicine; present data and a
simple statistical network model that describe an unanticipated property
of newly formed, immature neurons in the dentate gyrus.
These immature granule cell neurons are thought to increase pattern
discrimination, even though they are a small proportion of the granule
cells in the dentate gyrus. But it is not clear how they contribute.
This work is one small step — along with other steps taken in a
multitude of labs worldwide — towards cracking the neural code, one of
the great biological challenges in research. As Eric Kandel and
co-authors write in Principles of Neural Science, “The ultimate goal of
neural science is to understand how the flow of electrical signals
through neural circuits gives rise to the mind — to how we perceive,
act, think, learn and remember.”
Newly formed granule cells can take six-to-eight weeks to mature in
adult mice. Researchers wondered if the immature cells had properties
that made them different. More than 10 years ago, researchers found one
difference — the cells showed high excitability, meaning that even small
electrical pulses made the immature cells fire their own electrical
spikes. Thus they were seen as “highly excitable young neurons,” as
described by Alejandro Schinder and others in the field.
But this created a paradox. Under the neural coding hypothesis, high
excitability should degrade the ability of the dentate gyrus — an
important processing center in the brain — to perceive the small
differences in input patterns that are crucial in memory, to know your
spatial location or the location of your car.
“The dentate gyrus is very sensitive to pattern differences,”
Overstreet-Wadiche said. “It takes an input and accentuates the
differences. This is called pattern separation.”
The dentate gyrus receives input from the entorhinal cortex, a part
of the brain that processes sensory and spatial input from other regions
of the brain. The dentate gyrus then sends output to the hippocampus,
which helps form short- and long-term memories and helps you navigate
In their mouse brain slice experiments, Overstreet-Wadiche and
colleagues did not directly stimulate the immature granule cells. They
instead stimulated neurons of the entorhinal cortex.
“We tried to mimic a more physiological situation by stimulating the
upstream neurons far away from the granule cells,” she said.
Use of this weaker and more diffuse stimulation revealed a new,
previously underappreciated role for the immature dentate gyrus granule
cells. Since these cells have fewer synaptic connections with the
entorhinal cortex cells, as compared with mature granule cells, this
lower connectivity meant that a lower signaling drive reached the
immature granule cells when stimulation was applied at the entorhinal
The experiments by Overstreet-Wadiche and colleagues show that this
low excitatory drive make the immature granule cells less — not more —
likely to fire than mature granule cells. Less firing is known in
computational neuroscience as sparse coding, which allows finer
discrimination among many different patterns.
“This is potentially a way that immature granule cells can enhance
pattern separation,” Overstreet-Wadiche said. “Because the immature
cells have fewer synapses, they can be more selective.”
Seven years ago, paper co-author James Aimone, Ph.D., of Sandia
National Laboratories, had developed a realistic network model for the
immature granule cells, a model that incorporated their high intrinsic
excitability. When he ran that model, the immature cells degraded,
rather than improved, overall dentate gyrus pattern separation. For the
current Overstreet-Wadiche paper, Aimone revised a simpler model
incorporating the new findings of his colleagues. This time, the
statistical network model showed a more complex result — immature
granule cells with high excitability and low connectivity were able to
broaden the range of input levels from the entorhinal cortex that could
still create well-separated output representations.
In other words, the balance between low synaptic connectivity and
high intrinsic excitability could enhance the capabilities of the
network even with very few immature cells.
“The main idea is that as the cells develop, they have a different
function,” Overstreet-Wadiche said. “It’s almost like they are a
different neuron for a little while that is more excitable but also
potentially more selective.”
The proposed role of the immature granule cells by Overstreet-Wadiche
and colleagues meshes with prior experiments by other researchers who
found that precise removal of immature granule cells of a rodent, using
genetic manipulations, creates difficulty in distinguishing small
differences in contexts of sensory cues. Thus, removal of this small
number of cells degrades pattern separation.
Newly Identified Brain Cancer Mutation Will Aid Drug Development
A collaborative effort between Duke Medicine researchers and neurosurgeons and scientists in China has produced new genetic insights into a rare and deadly form of childhood and young adult brain cancer called brainstem glioma.
The researchers identified a genetic mutation in the tumor cells that plays a role in both the growth and the death of a cell. Additionally, the mutation to the newly identified gene may also contribute to the tumor’s resistance to radiation.
The findings, published online in the journal Nature Genetics on June 1, 2014, provide both immediate and long-term benefits. Knowing that this mutation may render radiation ineffective, patients could be spared that therapy. The mutation would also serve as a strong candidate for drug development.
The researchers conducted genetic tests and found that many of the tumor cells had a mutation in a gene called PPM1D, which causes cells to proliferate and avoid natural death. It is the first time this mutation has been found to be a major driving force in the development of brainstem gliomas; it is not evident in other brain tumors.
If tumors have this PPM1D mutation, they do not have another more common genetic mutation to the TP53 gene, a tumor suppressor that, when defective, is linked to half of all cancers.
“This finding has immediate clinical applications, because either mutation - PPM1D or TP53 – cause the tumor cells to be resistant to radiation,” said senior author Hai Yan, M.D., Ph.D., a professor of pathology at Duke University School of Medicine. “Knowing that could spare patients from an ineffective treatment approach.”
Additionally, the PPM1D genetic mutation is a strong candidate for new drug development.
“This finding gives us a clue as to why these particular tumors are growing inappropriately,” said co-author Zachary Reitman, M.D., Ph.D., a research associate at Duke. “These clues may help us to design better treatments for this type of cancer.”
Yan said his lab is working to identify new treatments that could target the PPM1D genetic mutation and shut down its cancer-growing capabilities.
“PPM1D is itself a target for drug development, because the gene mutation causes cells to avoid death and proliferate,” Yan said. “In drug development, it’s easier to turn that growth function off than it is to switch on the cell’s defective tumor suppression mechanism.”